rs108074145 SNP Detail

Summary

• ID
  rs108074145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7470288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAAA CAATGGCCTA
  GTCATTCTGG GGTAAGGGCA CTGACAGACC AAAGAAAGAA TTCTATCCAA GTTCAGCTTG
  GTGAACCATT GAGTTTATTG AGGCCACTTA TAGGTACACG GGTGACTCAA AGGCAGTTAC
  ATCACCAGGA AGTCCCTTGG GCAGTTTATA GGCAACTATA CAAATTAAAA ATCTCACCTG
  R
  AGCGTGGGTG ATTCACAAAG AACCTGCACT CCTGATGAGT TCCATGGGCA GCTTCAGTAA
  TGGAAGAGTC CTTCTGGTCA ATTTGCTCTT GGATATACAC CTTCCTCCAA TGAGTCTCCT
  GTGGCTGATT CAAGACAGCA ATGGTCATGT CCACCTTAGA AGAAACAACT ACACAATAGC
  CTAGAAGATC TAATTTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146020465	ENSMUSSNP1725467	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108074145					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7470288 () rs orientation: forward

Symbol	Name	Function Class
Atl3	atlastin GTPase 3	890 bp upstream
Cpgi10560	CpG island 10560	959 bp proximal
Gm58988	predicted gene, 58988	within coordinates
Rr543688	regulatory region 543688	within coordinates
Rr543689	regulatory region 543689	627 bp proximal
Rr543690	regulatory region 543690	1216 bp proximal
Rr543691	regulatory region 543691	1941 bp proximal
Rr543692	regulatory region 543692	1998 bp proximal
Tssr154754	transcription start site region 154754	1097 bp upstream
Tssr154755	transcription start site region 154755	1110 bp upstream
Tssr154756	transcription start site region 154756	1322 bp upstream
Tssr154757	transcription start site region 154757	1504 bp upstream
Tssr154758	transcription start site region 154758	1540 bp upstream
Tssr154759	transcription start site region 154759	1580 bp upstream
Tssr154760	transcription start site region 154760	1599 bp upstream