rs108075369 SNP Detail

Summary

• ID
  rs108075369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48722474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAACTTCAGT TATGTCTTCT CTTAAAAATA CAAGCAGAGG
  GCTTTATCTA CCTAGCTTTA AACTAACTGT CCTTCCCTCC TTTCATCTCT CTTCCTTCCT
  Y
  CCCCCCCCCC CCCACTTTCT GTGCAGTCTC TTAGAATGTC ACCTCCCTAG ACCCCTTGAA
  ACCCTAGTGT TCACAACAGA GAGCCAAGTA TACTTTCCTG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133166449	ENSMUSSNP2629703	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108075369					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48722474 () rs orientation: forward

Symbol	Name	Function Class
Gimap1	GTPase, IMAP family member 1	1745 bp downstream
Gimap5	GTPase, IMAP family member 5	657 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	1127 bp proximal
Rr146256	regulatory region 146256	1873 bp distal
Rr146257	regulatory region 146257	126 bp proximal
Rr368069	regulatory region 368069	466 bp upstream
Rr399641	regulatory region 399641	955 bp upstream
Tssr56207	transcription start site region 56207	629 bp upstream
Tssr56208	transcription start site region 56208	648 bp upstream
Tssr56209	transcription start site region 56209	683 bp upstream
Tssr56210	transcription start site region 56210	697 bp upstream
Tssr56211	transcription start site region 56211	1167 bp upstream
Tssr60779	transcription start site region 60779	554 bp downstream
Tssr60780	transcription start site region 60780	1961 bp downstream
Tssr60781	transcription start site region 60781	1995 bp downstream