rs108075846 SNP Detail

Summary

• ID
  rs108075846
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78138954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG ATAGGGCTGT CTAGATCTTT
  T
  CGTCGACTGC CCACCTGTCC CTCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148180900	ENSMUSSNP2607646	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325024236	CHEV_15_78085184	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108075846					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78138954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	within coordinates
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	210 bp proximal
Rr505235	regulatory region 505235	1674 bp proximal
Tssr131904	transcription start site region 131904	1521 bp downstream
Tssr131905	transcription start site region 131905	1451 bp downstream
Tssr131906	transcription start site region 131906	110 bp upstream