rs108075939 SNP Detail

Summary

• ID
  rs108075939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88748744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGTTTT CTCCCGAGGT
  AATGACCGTA CCGGAGGGGG CGTCGCGCAG TCGGAGCCAC AGAGGGCAGA GGACGCCCAG
  GCGGAAACCT GCGACCCCGG GAGTTGCTGC TCTAAGAGTC CCGGGGAGCC CGCGCCAGCC
  ACGTCGCCGC TCCGGCTCCC ATCCGAGCGG GACGCGCGCG GCGTGGAGTC CCAGTCCGGG
  K
  CCCGGCCCGG CCCGGGCGGG ATGGCTGGGC CCGGAGAAGT AGTGCCCAGG AGGACTCGCG
  TAAACTTCGG GCGCGGGGCC CCGATGTGGG GTGGCGACCC CAGCCCGGTT CTCGCGGCCG
  GAGGCGCCCC CAAGCCTGGC TGGCCCGGGC CGGGGGTGGG GTGGGGTGGG GTGGGGGTGG
  GACTTGGACT GTTTCGGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss399389876	MGP_WTSI_17_88840656	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	T	T	G	G	T	T	G	G	G	G	G	G	G	T	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	T	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs108075939					SNP	T	T	G	G	T	T	G	G	T	T	G	G	G	G	G	G	G	T	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399389876	MGP_WTSI_17_88840656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88748744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	within coordinates
Foxn2	forkhead box N2	within coordinates
Rr405533	regulatory region 405533	652 bp downstream
Tssr146228	transcription start site region 146228	575 bp downstream
Tssr146229	transcription start site region 146229	529 bp downstream
Tssr146230	transcription start site region 146230	225 bp downstream
Tssr146231	transcription start site region 146231	208 bp upstream
Tssr149806	transcription start site region 149806	504 bp downstream