rs108077248 SNP Detail

Summary

• ID
  rs108077248
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28394149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACAGC TCAGCTTATT
  CCTAATGATT TTAATATCTG GAAATTCATG TCTCTGTCTA CGTTTAAAAG CAACGTTGGA
  GACTTCCCCT CGCTGAGCAT GACAGCTTAG GTCTTTAATC CCAGTATTAA AGAAGCAGAA
  GCAGGAGTTT CCAGACCTGC GAGGGAGGCA GAACCAGCAC CAAGGTCACC GCACCCCAGC
  M
  ATGGAGAGCT GTCATCCGAC ATCCCCCCCT CTGATCTTTA CTCGTAGCTC AGCAGCAGAG
  CGCCATGCCT AGCATGCCCG GGCCCTTGCA TCTCATTCCT GGTACCAAGA GAATAAAATT
  CTACTCCACA ACAGCTTCCT CACCAATCTT TCGGACCTGG AATGTTTTAG AACCGTTGCT
  TTGGCTGGGT ATAGTGACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352109	CHEV_17_28312120	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108077248					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28394149 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	1376 bp proximal
Rr339474	regulatory region 339474	851 bp proximal
Scube3	signal peptide, CUB domain, EGF-like 3	321 bp downstream
Tssr143392	transcription start site region 143392	1955 bp upstream
Zfp523	zinc finger protein 523	1987 bp upstream