rs108077621 SNP Detail

Summary

• ID
  rs108077621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125567335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGGAG GAGGGAGTAA
  GACTGAAAAA ATCCGCTAGT ACCTCTACTG CTACGCATGC TTCTCTTTCA TCTCTGCCTT
  CTCCTCTGGG TCCCACCTTA CCGTATGCCA TGCCACAGTA ACATCCCACT ACCTTGAGAG
  AAGTTCCTGT GAGTGGTAAT GGCCTTGTCT GTGAGTGGCA GCTAATGAAT GACGTGTGGG
  R
  GCATATGAAA TAGCTACAGT CCCTGTAAAA CATCCCCACA ATGCTCCGGG AGAGTACCTG
  CATCTCCGAA GCATCCTGGG CAGCATTTTT TAAAAGGTTG CTGGAGAGAT GGCTCAGTAG
  TTAAAAACGT GTACTGCTCT TGCAGAGGAC CTGAAAGGGT TTGTGTCAGG TAGCTCACAG
  TACCTCTGGC TCCTGAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147486077	ENSMUSSNP3054992	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320497843	CHEV_2_125551151	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108077621					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125567335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	1781 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	221 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	179 bp proximal
Rr367290	regulatory region 367290	677 bp downstream
Shc4	SHC (Src homology 2 domain containing) family, member 4	1267 bp upstream
Tssr26008	transcription start site region 26008	1878 bp upstream
Tssr26009	transcription start site region 26009	1724 bp upstream
Tssr26010	transcription start site region 26010	1692 bp upstream