rs108080243 SNP Detail

Summary

• ID
  rs108080243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC ACCGGTGTGT GTGGGTGGCT
  R
  GATGGGTGTT GTGGAGAGCT CGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147254503	ENSMUSSNP4482774	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss325641574	CHEV_18_61354412	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108080243					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327830 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	631 bp distal
Rr356345	regulatory region 356345	within coordinates
Tssr153542	transcription start site region 153542	1440 bp downstream
Tssr153543	transcription start site region 153543	1606 bp downstream
Tssr153544	transcription start site region 153544	1788 bp downstream