rs108082179 SNP Detail

Summary

• ID
  rs108082179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45864931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGTAGT TGGCCCTACT
  ATGTGACAAA CATTCTACAT TGTGATTGCC AGAAACTTTC AAACATTTTA TTTAAAGGAA
  TTTTATTATT AAAGGAGTGG TGGTACACAC CTTTAGTCCC ATCACTCAGA AGACAGAGGC
  AGGTGGATCT CTGAGTTCGA GACCAGCCTG GTCTACAGAG TGATTCCAGG ACAGCCAGAG
  Y
  GCACAGAGAA ACCCTGTCTT GACAAACTAA GGTAAATAAA TAAGAGTTAT TTATTTTTTA
  TTTTTATTTT ATGTGTATAA GTGTCTTGCC TGCATCTGTT CATATCTAGT GTCTGTGGAG
  GTCAGAAAAG GGCATCATAT TAGATCTCAG ATGGTTGTTA GCCCACCTGT GGATGTTGGG
  AATTGAACCT GGGTCATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398302170	MGP_WTSI_17_45690954	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C	C	C	C	T	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108082179					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C	C	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398302170	MGP_WTSI_17_45690954	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45864931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	1570 bp proximal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	1698 bp upstream
Rr405301	regulatory region 405301	1574 bp downstream
Rr405302	regulatory region 405302	1467 bp upstream
Rr527425	regulatory region 527425	1452 bp distal
Rr527426	regulatory region 527426	1315 bp distal
Rr527427	regulatory region 527427	373 bp proximal
Rr527428	regulatory region 527428	1251 bp proximal
Tssr144787	transcription start site region 144787	1631 bp upstream
Tssr144788	transcription start site region 144788	1688 bp upstream
Tssr144789	transcription start site region 144789	1722 bp upstream
Tssr144790	transcription start site region 144790	1789 bp upstream
Tssr144791	transcription start site region 144791	1800 bp upstream
Tssr144792	transcription start site region 144792	1873 bp upstream