rs108084908 SNP Detail

Summary

• ID
  rs108084908
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40155810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCCCGTT TCGGCCGCCC TTGCCGTCGT CGCCGGCCCT
  CGTTCTGCTG TGTCGTTCCC TCCTCCCCGC TCGCCGCAGC CGGTCTTTTT TTCCTCTCTC
  C
  CCCCCTCTCC TCTGACTGAC CCGTGGCCGT GCTGTCGGAC CCCCGCATGG GGGGCGGCCG
  GGCACGTACG CGTCCGGGCG GTCACCGGGG TCTTGGGGG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385441	CHEV_17_39981864	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108084908					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40155810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	252 bp proximal
Rn18s-rs5	18s RNA, related sequence 5	1435 bp upstream
Rr331227	regulatory region 331227	1210 bp distal
Rr331228	regulatory region 331228	210 bp distal
Rr331229	regulatory region 331229	191 bp proximal
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	1428 bp upstream
Tssr144603	transcription start site region 144603	1533 bp upstream
Tssr144604	transcription start site region 144604	1591 bp upstream
Tssr144605	transcription start site region 144605	1641 bp upstream
Tssr144606	transcription start site region 144606	1699 bp upstream
Tssr144607	transcription start site region 144607	1808 bp upstream
Tssr144608	transcription start site region 144608	1955 bp upstream
Tssr148051	transcription start site region 148051	1590 bp upstream
Tssr148052	transcription start site region 148052	1376 bp upstream
Tssr148053	transcription start site region 148053	1270 bp upstream
Tssr148054	transcription start site region 148054	758 bp upstream
Tssr148055	transcription start site region 148055	509 bp upstream
Tssr148056	transcription start site region 148056	161 bp upstream
Tssr148057	transcription start site region 148057	203 bp downstream
Tssr148058	transcription start site region 148058	824 bp downstream
Tssr148059	transcription start site region 148059	859 bp downstream
Tssr148060	transcription start site region 148060	980 bp downstream
Tssr148061	transcription start site region 148061	1089 bp downstream
Tssr148062	transcription start site region 148062	1604 bp downstream
Tssr148063	transcription start site region 148063	1735 bp downstream
Tssr148064	transcription start site region 148064	1977 bp downstream