rs108085480 SNP Detail

Summary

• ID
  rs108085480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88275395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTTTGTCT GCCACTCAGT GGTGTCACTT TCAAACATGG
  CTGCTTCCGT CTACAAACTA ACCTTACCTG CATTGCTTGG GATTAAAGGT GTATATTAAG
  GTCTCGTCTG CATTCCAGCC AGAGGGATTA ATGTGTGGCC TGTCTCTATT CCAGCTGGAC
  R
  ACATACACTT AGGTCCTTGG ATGTGATCCC TTGTCAGAGC AGCCGTGTTG CTGGATTAAA
  ATTCCTCTAC AATTGTTCTT TCAAGATCCC TGAAGAATTG TGTTGCGCTT TTGACGGGGA
  TTGCGCTGAT TGCAGATTGC TTTTGGTAGG ATGGCCGTTT TTACTTTATT AATCCTGCTA
  ATCTATGTGC ATGGGACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500508	CHEV_17_88367307	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108085480					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88275395 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	1037 bp downstream
Rr333904	regulatory region 333904	406 bp proximal
Rr343663	regulatory region 343663	519 bp proximal