rs108085841 SNP Detail

Summary

• ID
  rs108085841
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39677141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGACCTT GAGATGGGTC
  CAAGAGCTGG TAAACAATGT TCAGAGGGGA GAACATACAC ACACACACAC ACACACACAC
  ACACACACTC CTAAAAGCAC ATATTTACTT TTAGTAGTCC AAGGCTACTA AAACCTGGTT
  CATTCACTCA GCAAATAATT ATTGATTATT TTCCTGGAAC TGTCCTGGCG ACGAGGCCAA
  W
  AGGAAGCCCT GAAAACACCA GTGTGCACTG GGTGGGAAGG AAACGAGACA GTAGCTTAGC
  TGAGCTTGTG CCTCTTACAC AGCCTCTCTT GGACCTTATG CTTTGGCCTG GTTTTAATGC
  TGAACACAAA CCCTGCTTGC TCTGGCAAAG AGAACCTCTC AGGATTGGCT GGTCCCTGAA
  AGTCACCTCT GACCTGCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147674394	ENSMUSSNP3662234	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss324931221	CHEV_15_39645291	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108085841					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39677141 () rs orientation: forward

Symbol	Name	Function Class
Dpys	dihydropyrimidinase	within coordinates
Gm16291	predicted gene 16291	1368 bp downstream
Gm62327	predicted gene, 62327	within coordinates
Rr302762	regulatory region 302762	660 bp proximal
Rr309646	regulatory region 309646	1833 bp distal