rs108086877 SNP Detail

Summary

• ID
  rs108086877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCCATCT CCATCCATAT GCTGTCGGCC TAGGTCACGG
  CACAGGGAGG GGATGGAAGC GAACATAACA CAGAGCTGGA CCTGCCACAC ACACACACCC
  Y
  GTAGCCCCCC CTTACTGTAC ATTCCCTTCC TTGCATCCTT CAGTGGTGAG AAAAACTATC
  CCGGTGAAGA TCGGCGTTAG AATGGTGATA GATGTGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120010360	PARCsnp_1.07447	PARC_SEQ	INBRED	f	SNP	C	T
ss320123251	CHEV_1_174140706	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108086877					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038142 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	230 bp downstream
Tssr15168	transcription start site region 15168	449 bp upstream
Tssr15169	transcription start site region 15169	371 bp upstream
Tssr15170	transcription start site region 15170	349 bp upstream
Tssr15171	transcription start site region 15171	331 bp upstream
Tssr15172	transcription start site region 15172	250 bp upstream
Tssr15173	transcription start site region 15173	156 bp upstream
Tssr15174	transcription start site region 15174	102 bp upstream
Tssr15175	transcription start site region 15175	1408 bp downstream