rs108087797 SNP Detail

Summary

• ID
  rs108087797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47016874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGTTCA CAGACTCGTA
  TTAAGAGACG ATTAAAATAC AATCACATAA ATTACACAAA CCTCAGAATG ACATGGAGGA
  ATATATTTTA GTTATCCTAG TAGCCAATAG ATTACATTAA AGAACTGGAG GAGGTCCATC
  AAAAATAAAT CTGCGAGCTG GGTGTGATGG GTTTGCCCCT GTAACCCCAC CTCTTGGAAG
  R
  TAGAGGCAGG ATGATCAGGC GTTACAGACC AGCCTTAACT ATAGCCAGTT GCAGACCAGT
  TTGGACTACA ATAAGAACCT CTTAAAAGAA AGAAAAAAAA AAGACAAAAA AAAAAAAAAA
  AAAAAACCTA CCCGCCACCA CAAACAACAA CAACAAAGAA ACAACTCTCA GAACTAAAAA
  GTTACAAATA AGCCTGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398326779	MGP_WTSI_17_46842897	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108087797					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326779	MGP_WTSI_17_46842897	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47016874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	577 bp distal
Gm65134	predicted gene, 65134	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	922 bp upstream
Rr370260	regulatory region 370260	702 bp downstream
Rr527798	regulatory region 527798	957 bp distal
Rr527799	regulatory region 527799	751 bp distal
Rr527800	regulatory region 527800	830 bp distal
Rr527801	regulatory region 527801	158 bp distal
Tssr148375	transcription start site region 148375	948 bp upstream
Tssr148376	transcription start site region 148376	935 bp upstream