rs108089080 SNP Detail

Summary

• ID
  rs108089080
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34923536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGGGAAC ATTTTTTTGA ACAGCATTCT TTACATTATA
  TTTGTAATCA TGAGCACGGT ATGTTCAAAA GATGTCAAGG TTTTGCTCAT GAAAAGAAAA
  A
  ATGAAGATGG AGGAGGGGGG AAGAAGGAAA AAATTACAAT TTTTGCACAC CTAGTTTCTG
  CAGAGATTTT ACCAGTTATG TGATAAATAC CCCTGTAGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss149109331	ENSMUSSNP1665283	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322578199	CHEV_8_35519436	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs108089080					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34923536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	680 bp distal
Gm39159	predicted gene, 39159	546 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	536 bp upstream
Rr400818	regulatory region 400818	753 bp downstream
Rr662016	regulatory region 662016	597 bp distal