rs108090315 SNP Detail

Summary

• ID
  rs108090315
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:39908461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGTGTG TATCTGTGTG
  GGGTGGAAGA GGGGAGTGTC AGGGTAAGTA CGGGTGTGTA CAATGTGAGA GTGTGTGTTG
  ACATCAATGT GTGAGTGCTG GTACACATAA AACTCATGAA GAGGTTGGTG GACAACTTCA
  GATGTCTGTT TTTGTTTCCT CTTTGTTTGA GACAAAGTGT GTTGTCCATT GCTGCGTATT
  C
  CAGGCTATTT GGCCCAATAG CTTCTTGGAG TCTTTCGTCT TGCCTCAAAT CTCCATATAG
  GAGGCCTGGG ATTAGATTTC TATTTCTTTG CCCTGATTTA TGTGAGGTCT GGGGATTTGA
  GTTCAGGTTC TCATGCTCAG CATTGTTTTC AATACTGTTA GAGTAGCCAA AATACAGATA
  GTTAATTTCA GTTTAGTAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144611583	ENSMUSSNP3061665	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108090315					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:39908461 () rs orientation: forward

Symbol	Name	Function Class
Gm5609	predicted gene 5609	490 bp upstream
Rr1558	regulatory region 1558	within coordinates