rs108090596 SNP Detail

Summary

• ID
  rs108090596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150310731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCATTGCCCT GGAAAACTCA TAAGATCCTT GCTTTTAATA
  GTCGAAGTGT ATCCCATTGT GTAAATGAAA CACATTTTCT GTAATCATTC TTTGGTTGAG
  R
  GACATCTGGG TTGTTTCTAG CTTCAGCCTA TTATGAATAA AGCTGCTATG AAGGTAGTGG
  AGCACGTGTC CTTTTGGTAT AGGTGAGCAT CTTTTGGGTA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147948907	ENSMUSSNP6749580	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108090596					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150310731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12405	CpG island 12405	1263 bp proximal
Gm14127	predicted gene 14127	600 bp downstream
Rr567041	regulatory region 567041	1247 bp proximal