rs108091875 SNP Detail

Summary

• ID
  rs108091875
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24927717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG AGCACTTTAT AAATAAATTT
  A
  AAAATTAACT TGCAGGCTGG AGAGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325333152	CHEV_17_24845688	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108091875					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24927717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	837 bp distal
Rr392440	regulatory region 392440	1498 bp upstream
Rr405091	regulatory region 405091	891 bp downstream
Rr523395	regulatory region 523395	1094 bp distal
Rr523396	regulatory region 523396	593 bp distal
Rr523397	regulatory region 523397	within coordinates
Rr523398	regulatory region 523398	119 bp proximal
Tbl3	transducin (beta)-like 3	1090 bp upstream
Tssr146772	transcription start site region 146772	1133 bp upstream
Tssr146773	transcription start site region 146773	1082 bp upstream