rs108092344 SNP Detail

Summary

• ID
  rs108092344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCTTCC ATTCTGCACC
  TGAAGTTCCT GGCTGTTTCC TGTGACTTGA GCAACAGGGA GGTTCTGATC TGGACGGATC
  TCCACTGCTC TGAAAGCGGG CTGGCTGTGG TAGGAAGAGT GAACTGTGAG CTGGGGCAGA
  GGATGAATTA CATGGCAGAA AGAGCCCCTG CTCCCAGAGG AGGGGGCACA GGTTAGTGGG
  R
  CACGGCTGGC TGGCTTTGCT GGATAGCAGG AATAGTCCCC ACATCAAGGC AGGCTGCCGT
  GGCCTCGCTT TCCTGGGCAG GGACTCCTGG CCCAGAAGTG GAGCTCTGCA GAGGACTAGG
  GGCCTGCTTT CCTCACACCC AGCTCTGTCC CTGTCTCAGA TGTCCCAGTA TCTCGTTAGG
  GTCACATCAG CAGGAGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136406310	ENSMUSSNP5636437	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108092344					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1604 bp upstream
Rr677858	regulatory region 677858			883 bp proximal
Rr677859	regulatory region 677859			1616 bp proximal
Smim35	small integral membrane protein 35			1159 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant