rs108093808 SNP Detail

Summary

• ID
  rs108093808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCG TTCTAGTACC TCCCGCGAAA
  W
  GCGGGGAAGG TTGGACCGAA GTCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147881241	ENSMUSSNP5353168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320548174	CHEV_2_147004223	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108093808					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	within coordinates
Cpgi12377	CpG island 12377	155 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	1803 bp proximal
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	592 bp distal
Rr566761	regulatory region 566761	198 bp distal
Rr566762	regulatory region 566762	469 bp proximal