rs108093966 SNP Detail

Summary

• ID
  rs108093966
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40157240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGTTTGTCC TCCCGCGAGG CTCTCCGCCG CCGCCTCCTC
  CTCTCTCGCG CTCTCTGTCC CGCCTGGTCC TGTCCCACCC CCGACGGCTT CGCTCGCGCT
  T
  CCTTACCTGG TTGATCCTGC CAGTAGCATA TGCTTGTCTC AAAGATTAAG CCATGCATGT
  CTAAGTACGC ACGGCCGGTA CAGTGAAACT GCGAATGGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385452	CHEV_17_39983294	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108093966					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40157240 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	1316 bp downstream
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	5 bp upstream
Rr331228	regulatory region 331228	1640 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	within coordinates
Tssr144603	transcription start site region 144603	103 bp upstream
Tssr144604	transcription start site region 144604	161 bp upstream
Tssr144605	transcription start site region 144605	211 bp upstream
Tssr144606	transcription start site region 144606	269 bp upstream
Tssr144607	transcription start site region 144607	378 bp upstream
Tssr144608	transcription start site region 144608	525 bp upstream
Tssr144609	transcription start site region 144609	669 bp upstream
Tssr144610	transcription start site region 144610	828 bp upstream
Tssr144611	transcription start site region 144611	965 bp upstream
Tssr144612	transcription start site region 144612	1094 bp upstream
Tssr144613	transcription start site region 144613	1213 bp upstream
Tssr144614	transcription start site region 144614	1245 bp upstream
Tssr144615	transcription start site region 144615	1332 bp upstream
Tssr144616	transcription start site region 144616	1367 bp upstream
Tssr144617	transcription start site region 144617	1440 bp upstream
Tssr144618	transcription start site region 144618	1470 bp upstream
Tssr144619	transcription start site region 144619	1492 bp upstream
Tssr144620	transcription start site region 144620	1541 bp upstream
Tssr144621	transcription start site region 144621	1646 bp upstream
Tssr144622	transcription start site region 144622	1665 bp upstream
Tssr144623	transcription start site region 144623	1704 bp upstream
Tssr144624	transcription start site region 144624	1801 bp upstream
Tssr144625	transcription start site region 144625	1843 bp upstream
Tssr144626	transcription start site region 144626	1860 bp upstream
Tssr144627	transcription start site region 144627	1899 bp upstream
Tssr148055	transcription start site region 148055	1939 bp upstream
Tssr148056	transcription start site region 148056	1591 bp upstream
Tssr148057	transcription start site region 148057	1199 bp upstream
Tssr148058	transcription start site region 148058	594 bp upstream
Tssr148059	transcription start site region 148059	562 bp upstream
Tssr148060	transcription start site region 148060	410 bp upstream
Tssr148061	transcription start site region 148061	325 bp upstream
Tssr148062	transcription start site region 148062	174 bp downstream
Tssr148063	transcription start site region 148063	305 bp downstream
Tssr148064	transcription start site region 148064	547 bp downstream
Tssr148065	transcription start site region 148065	1409 bp downstream
Tssr148066	transcription start site region 148066	1485 bp downstream
Tssr148067	transcription start site region 148067	1566 bp downstream
Tssr148068	transcription start site region 148068	1682 bp downstream
Tssr148069	transcription start site region 148069	1877 bp downstream
Tssr148070	transcription start site region 148070	1946 bp downstream
Tssr148071	transcription start site region 148071	1959 bp downstream