rs108094096 SNP Detail

Summary

• ID
  rs108094096
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAAGGACCTT CGGGCAAGAG AAAGGGCGGC CCGCCGGGTC
  AGGGAGAAAA GAGGAAAGGA GGCTTGGGAA GCAAAAAGCA TTCCTGGCCT TCTGCTTTAG
  C
  TGGCAAGAAG AAAGGAGTGC CGCCCCAAGG TGGGAAGAGG AGGAAGTAGC GTTCTCCCCT
  CGGGACCAGT TCTGAAAAGC TGGGACTGTA CTAAAAGTTA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148565776	ENSMUSSNP4805694	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs108094096					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616797 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1376 bp upstream
Cpgi23	CpG island 23	333 bp distal
Rr395961	regulatory region 395961	1176 bp downstream
Rr407596	regulatory region 407596	1374 bp distal
Rr407597	regulatory region 407597	1154 bp distal
Rr407598	regulatory region 407598	1218 bp distal
Rr407599	regulatory region 407599	990 bp distal
Rr407600	regulatory region 407600	25 bp distal
Rr407601	regulatory region 407601	412 bp distal
Rr407602	regulatory region 407602	949 bp proximal
Rr407603	regulatory region 407603	1387 bp proximal
Rrs1	ribosome biogenesis regulator 1	Coding-NonSynonymous
Tssr5894	transcription start site region 5894	1184 bp downstream
Tssr5895	transcription start site region 5895	1093 bp downstream
Tssr5896	transcription start site region 5896	1077 bp downstream
Tssr5897	transcription start site region 5897	584 bp downstream
Tssr5898	transcription start site region 5898	1477 bp upstream
Tssr5899	transcription start site region 5899	1542 bp upstream