rs108095237 SNP Detail

Summary

• ID
  rs108095237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48048697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGACCTTA TGTAACCGGG
  GCGGGAGTGG CCGGGGCGGG CACGGGCCTT CCTGGCCCGG GGAAGCTGAG CGGAGCTGGG
  GCGGGAGGTG CAGGAGTGAA CTTGCAAGAA GTTTTGAGGG ACTCCCGGGC CCTGAGCTCG
  CTCTCCCTCC CCCGATAGAA CGGGGGCGGG GGGGGCTCGG GGGAGGGAGT CCGAGGCCCG
  R
  GGAGGTGTGC AGGCACCAAG GCCGGCGGGG CCTGGCCCAG CCTGGATGGT CGCGCGGAGT
  GGGAGGGCCG GAGAGGCGCC ACGCCCCGTG GGCTGGGCTG CCTGAGTCCC GGGTAGTGTG
  GACGTCCCAT CACTGCCTCC CTCCCTCCCT CGTTTGCCTT TCTCTCTCCT GAACCTCTTG
  CAGAAGACCC CTCTGGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353113	MGP_WTSI_17_47874721	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108095237					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353113	MGP_WTSI_17_47874721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48048697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9270	CpG island 9270	within coordinates
Rr331731	regulatory region 331731	897 bp distal
Rr337830	regulatory region 337830	1818 bp distal
Rr339943	regulatory region 339943	within coordinates
Rr405329	regulatory region 405329	657 bp downstream
Rr405330	regulatory region 405330	1739 bp upstream
Tfeb	transcription factor EB	within coordinates
Tssr145049	transcription start site region 145049	665 bp downstream
Tssr145050	transcription start site region 145050	623 bp downstream
Tssr145051	transcription start site region 145051	565 bp downstream
Tssr145052	transcription start site region 145052	373 bp upstream
Tssr148483	transcription start site region 148483	5 bp downstream
Tssr148484	transcription start site region 148484	1583 bp downstream