rs108097409 SNP Detail

Summary

• ID
  rs108097409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATGCTG GTACTTGTCC
  CCCTGGTCTC AGACTGACCA CACAACCCTT CCCTGGAGAG ACATTTGTCA GCTAGGCTGA
  GACTGGGAAC TAGGGGCTGC TTTGAGTGTT TGTGTGCACA CAGTTGGCTC TATGAGAGTG
  ATTCTCAATG GCAGGTGGCT GCCTGCCTTG CAGTCCCTTG CCAGCTGTGC CCCAGCCCAG
  R
  GATCTTGTGG TAGTAGTTTT TTAAACCTCA ACTAGTCTGC CATGATCGGA CCATAAAGGA
  AGGACTTAAA CTTGGGGTTA GTGGAGAGTG AGCACGATAT TTTCTGATGG ATCCAGGGAT
  GACCTACTCC CCTGTTGAGG GCCTTGTGTC TGTCTTCATC CTTTGGTTGC AGCTTGGAGG
  GTGAGGGAAG AACTGAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144663612	ENSMUSSNP1681133	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108097409					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887386 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	852 bp upstream
Tssr7322	transcription start site region 7322	881 bp upstream
Tssr7323	transcription start site region 7323	924 bp upstream
Tssr7324	transcription start site region 7324	973 bp upstream
Tssr7325	transcription start site region 7325	988 bp upstream
Tssr7326	transcription start site region 7326	1018 bp upstream
Tssr7327	transcription start site region 7327	1047 bp upstream
Tssr7328	transcription start site region 7328	1350 bp upstream
Tssr7329	transcription start site region 7329	1385 bp upstream
Tssr7330	transcription start site region 7330	1399 bp upstream
Tssr12178	transcription start site region 12178	888 bp downstream
Tssr12179	transcription start site region 12179	931 bp downstream
Tssr12180	transcription start site region 12180	995 bp downstream
Tssr12181	transcription start site region 12181	1016 bp downstream
Tssr12182	transcription start site region 12182	1059 bp downstream
Tssr12183	transcription start site region 12183	1080 bp downstream