rs108098660 SNP Detail

Summary

• ID
  rs108098660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT TCCTACCACA TCTCTACCTC
  R
  CCTTCATCCC AGAGCCAAAA GTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736089	ENSMUSSNP6517921	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108098660					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1261 bp distal
Gm70191	predicted gene, 70191	1245 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1425 bp downstream
Tssr40055	transcription start site region 40055	1412 bp downstream
Tssr40056	transcription start site region 40056	1391 bp downstream
Tssr40057	transcription start site region 40057	1330 bp downstream
Tssr40058	transcription start site region 40058	1303 bp downstream
Tssr40059	transcription start site region 40059	1279 bp downstream
Tssr40060	transcription start site region 40060	1219 bp downstream
Tssr40061	transcription start site region 40061	1209 bp downstream
Tssr40062	transcription start site region 40062	578 bp downstream
Tssr40063	transcription start site region 40063	895 bp upstream
Tssr40064	transcription start site region 40064	955 bp upstream
Tssr40065	transcription start site region 40065	970 bp upstream
Tssr40066	transcription start site region 40066	1099 bp upstream
Tssr40067	transcription start site region 40067	1147 bp upstream
Tssr40068	transcription start site region 40068	1199 bp upstream
Tssr40069	transcription start site region 40069	1331 bp upstream
Tssr40070	transcription start site region 40070	1416 bp upstream
Tssr40071	transcription start site region 40071	1440 bp upstream
Tssr40072	transcription start site region 40072	1485 bp upstream
Tssr40073	transcription start site region 40073	1508 bp upstream
Tssr40074	transcription start site region 40074	1533 bp upstream
Tssr40075	transcription start site region 40075	1546 bp upstream
Tssr40076	transcription start site region 40076	1573 bp upstream
Tssr40077	transcription start site region 40077	1592 bp upstream
Tssr44314	transcription start site region 44314	462 bp upstream
Tssr44315	transcription start site region 44315	933 bp downstream
Tssr44316	transcription start site region 44316	1016 bp downstream
Tssr44317	transcription start site region 44317	1074 bp downstream
Tssr44318	transcription start site region 44318	1457 bp downstream