rs108100657 SNP Detail

Summary

• ID
  rs108100657
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCAATC CAGGTATGAA
  TGAATAGGAG AACTCATAGC TTAATTGTGC TGATGCTGAC TGTACATAAG ACTTAAAATC
  CCTTGTATCC TGGTCTAAGC TCTTAGTCTT CTTCATCCCT GCCTTCTTGA CCAGGCCTTC
  CTTCAGCACC CTCCTCTTTT GAACTCTTAG ACAAGAACTC AATGTTGTTG ATGAGGATGA
  G
  TAAAAAGGAT AAAGCCTGTA ATCTATGAAC ACATAATAAA ACAGGGATAT TAAGCTTTTA
  GTTAGTTCAT TTAATGTTCA CAGCCATATT ATGAGCTAAA TACAACCATT ACTTTTTCTT
  CAGAAATGAA GAAGCTGCAT CTTAAAAGTT AGCAAAGAAA ACTTTATATG CCCCAGTACA
  GGGGAATGCC AGGGCCAAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148115348	ENSMUSSNP2299948	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108100657					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663494 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	644 bp downstream
Tssr138681	transcription start site region 138681	551 bp downstream
Tssr138682	transcription start site region 138682	500 bp downstream
Tssr138683	transcription start site region 138683	470 bp downstream
Tssr138684	transcription start site region 138684	436 bp downstream
Tssr138685	transcription start site region 138685	395 bp downstream
Tssr138686	transcription start site region 138686	276 bp downstream
Tssr138687	transcription start site region 138687	234 bp downstream
Tssr138688	transcription start site region 138688	412 bp upstream
Tssr138689	transcription start site region 138689	1040 bp upstream
Tssr138690	transcription start site region 138690	1098 bp upstream
Tssr138691	transcription start site region 138691	1135 bp upstream