rs108102937 SNP Detail

Summary

• ID
  rs108102937
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGGGG CACCGCATCC
  ACATGGCATG ACAGCTTCAG GTCCTGACCG AGTTGAATGT TCTCGCTTTC TTTGATCATG
  TCGGGGGTGA TCTGGAATGT GGCGTTCTTC AGGGCTGCAA GGAGATGGGG TTCGAAGAAG
  GCTGGAGCTG ACCCAAGGAC AGGTATCCAT GTTCCACCCC AGCTTCTCCC CTCAAACTGG
  C
  TGCACGCCAA TTCTGCGCGC GCGCGCGCGC GCGCACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACAAATAT CTCTCAGCCT AGAAATGGTT CCAATAGCTC AGAGATGTTT
  TCATAGCTTT AAAGAGCTCA ATGCAGAGAA GTGAGTTTGG TGCTGACTAC AGGCGTTAGT
  AATGAGCACA CTTCATCAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355134	CHEV_17_29983682	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108102937					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065711 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	111 bp distal
Rr330463	regulatory region 330463	1690 bp proximal
Rr341132	regulatory region 341132	within coordinates
Rr392501	regulatory region 392501	71 bp upstream
Tssr143596	transcription start site region 143596	202 bp downstream
Tssr143597	transcription start site region 143597	179 bp downstream
Tssr143598	transcription start site region 143598	1483 bp upstream