rs108103209 SNP Detail

Summary

• ID
  rs108103209
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:82068826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTG TGATTGCCTT GCCCCCCCCC
  T
  CCCCCGCCCC GCGCGCTTCG CCCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145259371	ENSMUSSNP1308864	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108103209					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82068826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	within coordinates
Gm51582	predicted gene, 51582	Intron
Inpp4b	inositol polyphosphate-4-phosphatase, type II	359 bp upstream
Rr666047	regulatory region 666047	513 bp distal
Rr666048	regulatory region 666048	within coordinates
Rr666049	regulatory region 666049	376 bp proximal
Tssr78167	transcription start site region 78167	304 bp upstream
Tssr78168	transcription start site region 78168	327 bp upstream
Tssr78169	transcription start site region 78169	364 bp upstream
Tssr78170	transcription start site region 78170	410 bp upstream
Tssr78171	transcription start site region 78171	504 bp upstream