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rs108104335 SNP Detail
Summary
  • ID
    rs108104335
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:56595706 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTAACAAAT GCCCCTGTGT
    GTTCAAGACA GAGACCTCTT GCAAGCCAAG AAGTTCAGAG GCAAATGTCT GAAACATCCA
    AGATTCTCTT TCTCTCTCCT TAAAGAGTAT GTTGGGAGTT AGGAGGTACA AAGCAAGTAT
    TGCTCTCTCA GAGGATCTGA GTTTGATTCC CAGCACCCAT AGCACGGGAT TCACAACTAC
    M
    TGTAACTCAA GGTCAAGGAC ACGTGATCTC TACAGGCACC ACATCCACAC GGGCATACAC
    ACAACTCAAA ATAAGATAAG CCAGGTGTGC GCCTTTAATC CCAGCACTTG GGAGTTGGAG
    CAGGAGGGTC TCTGTGAGTC CCAGGCCAAC CTGGTCTACA GAGTGAGACC CAGTTACAAC
    AAAACATAAA GCAAAAATAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398555294 MGP_WTSI_17_56428129 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108104335 SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss398555294 MGP_WTSI_17_56428129 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:56595706 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9353 CpG island 9353 1640 bp proximal
Plin3 perilipin 3 within coordinates
Rr405377 regulatory region 405377 1648 bp upstream
Rr529026 regulatory region 529026 220 bp distal
Rr529027 regulatory region 529027 7 bp proximal
Rr529028 regulatory region 529028 1246 bp proximal
Rr529029 regulatory region 529029 1795 bp proximal
Tssr145294 transcription start site region 145294 870 bp upstream
Tssr148779 transcription start site region 148779 840 bp upstream
Tssr148780 transcription start site region 148780 797 bp upstream
Tssr148781 transcription start site region 148781 752 bp upstream
Tssr148782 transcription start site region 148782 705 bp upstream
Tssr148783 transcription start site region 148783 1359 bp downstream
Tssr148784 transcription start site region 148784 1770 bp downstream
Tssr148785 transcription start site region 148785 1793 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory