rs108111189 SNP Detail

Summary

• ID
  rs108111189
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65251653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCCCTA TGTGGGAATC
  ATTCTGGTCT CTGACTTACT CCCACTGGGC CACGTGGCAC CAGGGCAAGG TCATCTCAAC
  ACTGGTTTAC TCTCTGCCCT TGGATACTGT TGGGGCCTTT GCTGAATTGG CGGTCTTCTC
  GGGCTAACTC CCTCTCCAGG TCCCCTGGAG CTGGACTGGT GATTATCTCA GACTTGCTGC
  A
  CCCCCCCCCC CTTGCAAGTT TTAAGCTACT GATCATCCAG ATGTTCACAG ATCAGAACAT
  TGAGCATAGA CTACTGATCA TCCAGATGTT CACAGGTCAG AACATTAAGC ATAGACATAG
  TCTCTCTCCT CTCTGCCCCC ATACTGACGC ACGTGCGACA TAGCAGCCAC ACCTGCAATG
  CCTCTAAGGG CAGTTCTTAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
ss398765006	MGP_WTSI_17_65293998	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
rs108111189					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398765006	MGP_WTSI_17_65293998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65251653 () rs orientation: forward

Symbol	Name	Function Class
Gm25344	predicted gene, 25344	63 bp downstream