rs108112698 SNP Detail

Summary

• ID
  rs108112698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177149935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC TCTTCTGTGA AATGTACCTC
  Y
  TTCACAGAGA TACCGTGATG ATTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146345165	ENSMUSSNP1609365	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320158854	CHEV_1_179252500	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108112698					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177149935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	359 bp proximal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	within coordinates
Rr423982	regulatory region 423982	383 bp proximal