rs108114539 SNP Detail

Summary

• ID
  rs108114539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137876004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACATAGAATT CCTGTCTTGA AAAACGATGG ATGGATGGAT
  GGATGGATGG ATGGATGGAT GGATGGATGG ACGGACGGAC GGACGGACGG ACGGACGGAC
  R
  GACAGACAGA CAGACAGACA GATAATGTTC AGTCCTTTTC GTCAGTCGCT GGATACCCGC
  TTTTCATTCT GACTTTTCTG TGATTGGTAG GGAGTATTAA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147634494	ENSMUSSNP2434728	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108114539					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137876004 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Rr602845	regulatory region 602845	1348 bp proximal
Tssr39828	transcription start site region 39828	1273 bp downstream
Tssr39829	transcription start site region 39829	1241 bp downstream
Tssr39830	transcription start site region 39830	1225 bp downstream