rs108116014 SNP Detail

Summary

• ID
  rs108116014
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGACACGA GTGGGTGTAT TTCTACCAAT TAGGGTCACG
  CACACAAAGG ACAAAAAATG TCTGGGCCGA TAACAGAAAA ACCAACGTTG GAACGGCACC
  T
  GCAAACATGT CAAGAGAGCA AGCACACTAA CCAGCAGAGG GAGGAGGCTG GGTCTGGGTC
  TTGGGTAGAC CCTGACCCAG AATCATCAGG GTGGTTTGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137771147	ENSMUSSNP5633436	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108116014					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792495 () rs orientation: forward

Symbol	Name	Function Class
Rr256757	regulatory region 256757	1906 bp proximal
Rr260899	regulatory region 260899	895 bp distal
Rr260900	regulatory region 260900	706 bp proximal
Rr263772	regulatory region 263772	1471 bp distal
Snx6	sorting nexin 6	629 bp downstream