rs108116637 SNP Detail

Summary

• ID
  rs108116637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGGCTG GCCTCAATTT
  CATAAAAATC TACCTGCCTC TGCCACCCAA GTGCTGAGAC TAAATTAATG CATGCGATAC
  CAAGTCTGGC AAGATAAAAG AAGTATTTTT TTAAAGTAGT TTAATCCGGG GGGGGCGGGG
  GGAGTGACAC ACAGCCCTCA GGAGGCAGAG GCAGGCAGTT TTCTATGAGT TCGAGGCCAG
  Y
  CTGGTCTACA TACCAAGTTC CAGGACAGGC AGAGCACCAC ACATTATTTA AAAAAAAAAA
  AAAAAAAAAA GCGTAAATCC GTTTCCCAGA GCCTCAGCAT TCTCTTTGGA CAGAATGTGT
  CTACATTCAA GCTTACTGTT CTGTCTTCTG AGACAGAGTT ACTATGTAAC CTTTGCAGGC
  CTCAAACTCT AGATCCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147738255	ENSMUSSNP5166846	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323532326	CHEV_10_127649344	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108116637					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	234 bp distal
Cpgi2388	CpG island 2388	791 bp proximal
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	443 bp proximal
Rr402345	regulatory region 402345	277 bp downstream
Rr402346	regulatory region 402346	516 bp upstream
Spryd4	SPRY domain containing 4	494 bp upstream
Tssr99849	transcription start site region 99849	513 bp upstream
Tssr99850	transcription start site region 99850	465 bp upstream