rs108117483 SNP Detail

Summary

• ID
  rs108117483
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26729672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCAGAG AGACTTACAC
  TAAGATCCAC TCGTTCAGAG AGTGTTAGCA AAGGTATAGC CGCCGCAGGT CACAATCCAG
  GTAGTGAGGA TGCCTTGGTT TCTGGGGCAG AACCAGAGAG GCTGCTGCTG CATTGGAGGC
  TTAGCTGCTG AGGGCCGGGG ACAGTGTGAG GCAGTAGATT TCAACTCTAG GAGAGGCCTC
  S
  CTGACCTGAG AGCCTCCCCA TTCCAGGTGT GTTTAGAAGC AACAAGCAAC GTTAGAGGCC
  ACAGGGGGTG ATAAGAATCA GCCAAAAGAC TTAGCCTGCC TCTCCCCTTT AACTGTGTGG
  CCTCTCCTCA TTCACTTTAC CATGCCACAG CTCCCTGTGA CTGGGCGAGA AGCAGCAGCT
  TCTATACGGG ACCTGTGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901258	MGP_WTSI_17_26647643	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108117483					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901258	MGP_WTSI_17_26647643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26729672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	1675 bp distal
Gm56886	predicted gene, 56886	705 bp downstream
Rr339410	regulatory region 339410	871 bp distal
Rr392454	regulatory region 392454	193 bp upstream
Rr405112	regulatory region 405112	1965 bp downstream
Rr405113	regulatory region 405113	1593 bp downstream
Rr406958	regulatory region 406958	8 bp distal
Tssr5044	transcription start site region 5044	1734 bp downstream
Tssr5045	transcription start site region 5045	1230 bp upstream
Tssr5046	transcription start site region 5046	1177 bp upstream
Tssr5047	transcription start site region 5047	1166 bp upstream
Tssr143233	transcription start site region 143233	1967 bp downstream
Tssr143234	transcription start site region 143234	1924 bp downstream
Tssr143235	transcription start site region 143235	990 bp downstream
Tssr143236	transcription start site region 143236	957 bp downstream
Tssr146955	transcription start site region 146955	1816 bp upstream
Tssr146956	transcription start site region 146956	1199 bp upstream
Tssr146957	transcription start site region 146957	1129 bp upstream