rs108118178 SNP Detail

Summary

• ID
  rs108118178
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66589787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATAAGG GCATTTTATG
  AGGTACACAG GCTTTTCACA CTTGGCTTCT ATTTCTGTTC CTAGAAAAGT AAACCAAAAA
  AAAAAAAAAA ATCAACAATT TCAACTCTGA ATTCTTAAAA AAAAAAATGT CATCCATCAA
  TGGCCTGTTT TGACCCTCTC TAAAGTCTAC TCGAATCAAA TTCCTTCCTT TTTTTTTTTT
  T
  TTTTTTTTTT CTTTAATTAG AATTTGTAAT TCCGGTAAAG ATAAAGATTT TGTACAAAGG
  TTTGTGTCCT GGATGGATCA AAGATCTTTT ACAATGAAAA TGACAGGAGA TAGGATTGCC
  TCAGACCTTT GTGGGTAAAG AATGTTATGA TTTGCCTCTC TCACTGTTTG TATACTGATT
  ACATCTCAGG GCCTGAGGTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147332504	ENSMUSSNP1851278	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108118178					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66589787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	1478 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	1888 bp upstream
Rr405709	regulatory region 405709	1703 bp upstream
Rr539737	regulatory region 539737	1327 bp proximal
Rr539738	regulatory region 539738	1675 bp proximal
Rr539739	regulatory region 539739	1729 bp proximal
Rr539740	regulatory region 539740	1888 bp proximal
Tssr151705	transcription start site region 151705	1871 bp upstream