rs108119280 SNP Detail

Summary

• ID
  rs108119280
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170899203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGCCGGAGTG GTAGTGTGGG AAAGGAATGG GCAGCGTGCA
  GACAGGGAGA GCATGAAGCG GGAAGACGTC TATGGGGTAT CGGGTCCCGG AGAGTGTGGT
  C
  GTGGGAGGGC GCGAGTGTGT GTGCATGTGT CCACGCGAGC GCCACGGGGC CACGCGCTAA
  TGGTCGAGTT GTGTTGTTGG TGTGCGTTGG TGTTGGGCAA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146152383	ENSMUSSNP6344630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108119280					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170899203 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	592 bp downstream
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	1359 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	158 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	700 bp downstream
n-TLcag7	nuclear encoded tRNA leucine 7 (anticodon CAG)	1985 bp upstream