rs108120036 SNP Detail

Summary

• ID
  rs108120036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166228792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCCATGCC CTTTGTTTAA GAGGCATTCT CAATTACAAT
  GTAAAGAAAA GCACGCTGCA GACTCAGTGA AATACAGCAT TTTAACCTTG ACTAAAGAGA
  R
  AAGCAAATAT ATTTTGGTAG TTTCAAAGCT ATGCCATACA TACACATGTG TAAGTGTAAG
  CATGAGTGCG GAGAAGGGTA CATGTACACA CATACTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146018944	ENSMUSSNP304874	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108120036					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166228792 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	207 bp proximal
Rr422580	regulatory region 422580	855 bp proximal