rs108121078 SNP Detail

Summary

• ID
  rs108121078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35722998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCAGGAT TCGAGGCTAG
  CTGTCTCTGC CTCCCATGGT CTTCCTACCG TGCTCTGTAG ACTTGGCTGA ATTCCTTCCG
  TGTGTGTAAT GTTTGATAAA GACTACATTG AACTGTGACC CGCCGGTCGC CCATTCTGCA
  CTCATCCGGC TCAGCCCAGA CAAGCAAGCA GGAGCAGGGG AAGCTTGCCT TCCAGGGCTC
  R
  TGATGATTTG TGGCGGGTGG CGTTCCTTCT CTCTTGTTTT TCTTGTGCTT TCCACAGTGT
  GGGGCCCAGC AGTAAGAATC TGGGAATCTT GCCTCTGAGT TCTGTTTTCT TGGACCAGTC
  TGACAAGTGA TGGAAGTGCT TAGGGACCAG ACCCGGCTGA ATGAATGACT TCTATAAACT
  GTCCAGATCC TGCATTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146415493	ENSMUSSNP1303120	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108121078					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35722998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			1385 bp downstream
Rr555792	regulatory region 555792			1113 bp distal
Rr555793	regulatory region 555793			within coordinates
Rr555794	regulatory region 555794			1157 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant