rs108121221 SNP Detail

Summary

• ID
  rs108121221
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21696836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAGGATCAGA TCAGCCTTGG CCTGAGAGTT TGAGCTGGTA
  CACGGATGGC AGTAGCCTCG AGGTTAAGGG TAAGCGAAAG GCGGGGACAG CAGTGCAGTG
  A
  TGGACAGAAA GCAAGTGATC TAGGCCAGCA GCCTCCCTAA AGGAACTTCA GCCCAAAAAG
  CCAAACTTGT GGCTTTAATA CAAGCTCTAT AAATGGTAAA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss145288401	ENSMUSSNP6316065	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs108121221					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21696836 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	1576 bp downstream
Rr392398	regulatory region 392398	1047 bp upstream
Rr522961	regulatory region 522961	1817 bp distal
Rr522962	regulatory region 522962	1519 bp distal
Rr522963	regulatory region 522963	137 bp distal
Tssr142879	transcription start site region 142879	1652 bp downstream