rs108121704 SNP Detail

Summary

• ID
  rs108121704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:12503084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAGTTTT GCCGCAGAAG ATTCTGGTTT GTTGTGTCTT
  TCCTGGCCGG TCGTGAGAAC GCGTGTAAGA GTTGGTGCCG AGAACCCGGG AAGAGAAAAC
  Y
  CGGGACGGAA ACTACCATCA CCGGCGCAAG GAAGATCCCT CATTCCGGAA CCAGAACTGC
  GGGTTATGGT AATGAAGGTT CCCGTAAAAC AGACTGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145184217	ENSMUSSNP2460120	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108121704					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12503084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k4	mitogen-activated protein kinase kinase kinase 4			Intron
				Noncoding-Transcript-Variant
Rr392297	regulatory region 392297			within coordinates