rs108125288 SNP Detail

Summary

• ID
  rs108125288
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30389043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TATCCCAAAA GTCCCCCACA CCCTCCCCCC ACTCCCCTAC
  CCACCCATTC CCTTTTTTTG GCCCTGACGT TCCCCTGTAC TGGGGCATAT AAAGTTTGCC
  A
  GACCAATGGG CCTCTCTTTC CAGTGATGGC CGACTAGGCC ATCTTTTGAT ACATATGCAG
  CTAGAGTCAA GAGCTCTGGG GTACTGGTTA GTTCATAATG T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145440502	ENSMUSSNP5140979	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108125288					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30389043 () rs orientation: forward

Symbol	Name	Function Class
Rr341157	regulatory region 341157	1643 bp distal
Tssr143615	transcription start site region 143615	226 bp downstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates