rs108126471 SNP Detail

Summary

• ID
  rs108126471
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47866034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGCACA TGCCTCTAGT
  CCAAGCACTT GGCTGGGGAT CAGGCTCAAG GCTTTCCCCA TGCTGGACCG GGAGGGACAC
  TGTCAGCAGC TAGAGCCCTA TCCCTCAACC TAAAATTTTA ATTTAAAATA TTTTTTGTTT
  CTTTTGTTCA TTTGCTTGCC CTTTTTTCTT TCTTTAAAAT TTATAAGATT TAAAAAAAAA
  W
  TCATTATTCA CATGTGTAAG AGTATGAGTG CGGTGCCTGT GGAGGCCAGG ATTGGGCGTC
  TGATCTCCTG GAGCCGGAGT TATAGGCAGT TGTGAGCTTC CCAGTGTGGT TCCTGGGAAC
  CTAAGGTGGG CTCTTTGCAG GTGCACCATA GTAGCTGAGC AATCTTTCCA GCCGGGTTAT
  GCCTGCTCCA CCCCCATAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398349258	MGP_WTSI_17_47692058	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	T	A	A	A	T	A	T	T	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108126471					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	T	A	A	A	T	A	T	T	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398349258	MGP_WTSI_17_47692058	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47866034 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
D17Mit65	DNA segment, Chr 17, Massachusetts Institute of Technology 65	1787 bp distal
Rr335188	regulatory region 335188	1434 bp distal
Rr335189	regulatory region 335189	834 bp distal
Rr335190	regulatory region 335190	234 bp distal
Rr335191	regulatory region 335191	within coordinates
Rr335192	regulatory region 335192	767 bp proximal
Rr335193	regulatory region 335193	1167 bp proximal