rs108126895 SNP Detail

Summary

• ID
  rs108126895
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43924905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGACAA CCAAGGTTTT
  TCAATTATTA CTTTGTAAGA ATTCTCTGTC TCTTTGTGTC TGTGTGTATC TGTCTCTGTG
  TTTGTGTGTC TGTGAATGTA AGTGTGTGTG TATGTGTGTG TGTGTGTGTG TGTGTTGGGG
  TGTGTGTGTC TGTGTATGTC AGAGTCTGTG TGATGTGTTG GTGTGTCTGT GTATGACTCT
  C
  TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATGTG TGTGTGCCAG
  CCACTTCTTG TGCATGTGCA GGTGGTGGAG GCCAGAAGAG AACGTAGTAG TTCCTGGAAG
  TAGAGTTACA GATGGTTATG CGCTGTCCTG TATGGGTTCT GGGAACTGAA CTCTGGTCCA
  TTTCTAGAGC AGTAGGCACT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	FVB/NJ	I/LnJ	LEWES/EiJ	NON/ShiLtJ	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss130654395	NCBIM37_NT_039649_chr17_43750963	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	FVB/NJ	I/LnJ	LEWES/EiJ	NON/ShiLtJ	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs108126895					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130654395	NCBIM37_NT_039649_chr17_43750963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43924905 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1812 bp downstream
Rr527133	regulatory region 527133	1985 bp distal
Tdrd6	tudor domain containing 6	1321 bp downstream
Tssr148139	transcription start site region 148139	1958 bp upstream
Tssr148140	transcription start site region 148140	1908 bp upstream
Tssr148141	transcription start site region 148141	1857 bp upstream
Tssr148142	transcription start site region 148142	1811 bp upstream