rs108127370 SNP Detail

Summary

• ID
  rs108127370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCCGTTCGCC GTTCGGAGGG CGGGGCCCTC ATTTGCATAT
  TTATGAGAGG AACCGAATGC TGTGGTGTAA TTATTGCTTC GGCCGGTCCG GTCCGAGCCG
  R
  GCCGGTCCGA GCCGAGGCCG CCCAGGCCGC TCGGAGCTGA AAACCGGAAC CCGGTGGTGG
  TGGGGGAGGG GCGAGAGGAA GGGGGAGGGA TATAGGCGAC G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134041052	ENSMUSSNP4703662	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108127370					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194483 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	642 bp downstream
Gm20783	predicted gene, 20783	1962 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	929 bp upstream
Rr689518	regulatory region 689518	562 bp distal
Rr689519	regulatory region 689519	439 bp proximal
Rr689520	regulatory region 689520	1307 bp proximal
Rr689521	regulatory region 689521	1423 bp proximal
Tssr3095	transcription start site region 3095	1935 bp upstream
Tssr3096	transcription start site region 3096	1855 bp upstream
Tssr3097	transcription start site region 3097	1779 bp upstream
Tssr3098	transcription start site region 3098	1428 bp upstream
Tssr3099	transcription start site region 3099	1325 bp upstream
Tssr3100	transcription start site region 3100	1300 bp upstream
Tssr3101	transcription start site region 3101	1188 bp upstream
Tssr3102	transcription start site region 3102	1045 bp upstream
Tssr3103	transcription start site region 3103	1003 bp upstream
Tssr3104	transcription start site region 3104	911 bp upstream
Tssr3105	transcription start site region 3105	801 bp upstream