rs108129033 SNP Detail

Summary

• ID
  rs108129033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27937607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCATCA CATCTCCATG
  TCTCTCCTGC CCCCTAATGG GCCTTTCCGG AGATCCCAGC TCTAAGGAGA ACAGTTACAC
  TCAGCCAGAA ACATAAATGC TTTTTTTGCT GGACACTTTT GCTTTCCACA GACTTCTCGA
  GGAGAAAACC CACCCAGGAA CCGCTCTGCC CTGGAATTTT AGAGAGGAAG AGACCGGAGC
  R
  CACAGGAGGG GGTCCAATCC TTGCCCAGTG CTTAGGAAAT AGCTAGATTC TTAGCAGCTG
  CCCCAGCGGT TATTGGGTCA GCTAAAGCTG GAGGAGGAAG TCACCAGTGA TGTGGGCCCC
  TGGGAAAAAG CTCTCAGGGG AGCCTAGCAG GGCACAAGGC TAGAACCAGC CTGGGTCACA
  GTGGCAGTGT GGCCGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349186	CHEV_17_27855578	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108129033					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27937607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1245 bp distal
Rr524285	regulatory region 524285	79 bp distal
Rr524286	regulatory region 524286	189 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates