rs108130980 SNP Detail

Summary

• ID
  rs108130980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAAGCTT CCTGCACCCA
  GAGTCTTCCC TTCCAGGGCT ATGAGAGTTG TAGAGCCGTT GTTTCCCGGT TCTACACATG
  CTCAGGAAAT ACTGTGTTTT CACCGTTTTC GATCACTCCC ATCCGACCAG TTTTAGTTGA
  GGGCCTCTCC ACGATCCGCT GTCATCATTT AGCAGTCCCA CTTTTTTCAT GACATACCTT
  Y
  TTTTTTTTTT TTTTTACTGG TGGAGTAACA AACCCAAGAT TATAAATGGT TGGTATGAGG
  TGAATTGCCA GTGCGGTGGA GCTGCTCTTG AATCGTTATT CTCAGTCCTA CAAGTAGACT
  CAGTAGAGCA CATCTTAAAA TGTTCCCTCT TGCTGAGTGT GATGGCACAT GCCTTTAATC
  CAAGAACTCA GAAGGCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137856396	ENSMUSSNP5298084	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108130980					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	335 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	426 bp upstream
Rr403319	regulatory region 403319	307 bp downstream
Rr467012	regulatory region 467012	685 bp distal
Rr467013	regulatory region 467013	within coordinates
Rr467014	regulatory region 467014	409 bp distal
Rr467015	regulatory region 467015	700 bp proximal
Rr467016	regulatory region 467016	792 bp proximal
Tssr113624	transcription start site region 113624	11 bp upstream
Tssr116494	transcription start site region 116494	437 bp upstream