rs108132507 SNP Detail

Summary

• ID
  rs108132507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73144252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGAGCGC TCCGCGAGCC
  CACAACAGCC GCGACCCCCT TAGCGACCCG CGGCCCCCGC CCGCCCGCCG CCCTCGGCGC
  CTGTCGCCTG GGCCGCCGGT CCGCAGACAG CTCTCTCCGT GACACCCCCA CTTCCTAGGC
  CGCCCCGCCC CCACAGCCGC CGTCCCCGCC GCAGCGTCGG GGGCGCGCCC GGGCTCCGAT
  Y
  CGGGGCCGGC CCGCGGGCCC GCGCTCCAGG GCCGCGCTCG CACCCCGCCC GCCCCGCCGC
  TCCGGAGGCT CGACTCGTGC TCGGGTGTCT GGGCTGTGGG CCGTGCCCGC CTCGTCGGTG
  CTAGCCCCTA TCACGCTGCC CTCTGGACCC TGGGCGTGGG GAACACTGCC CGGTAGCCTG
  CGGGTGCCGA GCGCCCGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398976842	MGP_WTSI_17_73186597	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108132507					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398976842	MGP_WTSI_17_73186597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73144252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	701 bp downstream
Tssr5197	transcription start site region 5197	1102 bp upstream
Tssr145775	transcription start site region 145775	598 bp downstream
Tssr145776	transcription start site region 145776	540 bp downstream
Tssr145777	transcription start site region 145777	507 bp downstream
Tssr145778	transcription start site region 145778	296 bp upstream
Tssr145779	transcription start site region 145779	367 bp upstream
Tssr145780	transcription start site region 145780	787 bp upstream
Tssr149306	transcription start site region 149306	212 bp downstream
Ypel5	yippee like 5	within coordinates