rs108136240 SNP Detail

Summary

• ID
  rs108136240
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12569675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACAATAGAAG AAACAAACAA ACCGATTTCT GAACCAGGAA
  CTGGCAAGCC AGATTGAGGC TTTTTAATTA AAAAACAATA CTATTACATT TGGGGGGGGG
  S
  GGGCATGCAC GTGTGTGCCA CTGCCTGCTT GTAGAGGACA GAGAGTACCT TTCCGGATCG
  CTACCCTTCT TCCAACATAT GAATCCTGAA GATCAATCAA A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148340681	ENSMUSSNP2815314	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108136240					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12569675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	329 bp distal
Rr642383	regulatory region 642383	977 bp distal
Rr642384	regulatory region 642384	802 bp distal
Rr642385	regulatory region 642385	255 bp distal
Rr642386	regulatory region 642386	within coordinates
Tssr64479	transcription start site region 64479	937 bp downstream
Tssr64480	transcription start site region 64480	696 bp downstream
Tssr64481	transcription start site region 64481	487 bp downstream
Tssr64482	transcription start site region 64482	202 bp upstream
Zfp110	zinc finger protein 110	within coordinates