rs108138994 SNP Detail

Summary

• ID
  rs108138994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48038230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGGAATA CTCATGGATT TGAGCATCTG TAGATTTTGA
  TAGTTCATAA TTTTTAAAAA GTTTTTTCTT TAAAATTTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGGGATGA TGAGATAAGT GTGCCTGGGC CACTGAATAT TTGTGGAGGT CAGAGGACAG
  ATCCAAGGAG TCAGGGCCTC CTTCTACCCT ATGGTACTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130668573	NCBIM37_NT_039649_chr17_47864254	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108138994					SNP	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130668573	NCBIM37_NT_039649_chr17_47864254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48038230 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	within coordinates
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	1445 bp upstream
Tssr145003	transcription start site region 145003	457 bp downstream
Tssr145004	transcription start site region 145004	1427 bp upstream
Tssr145005	transcription start site region 145005	1455 bp upstream
Tssr145006	transcription start site region 145006	1464 bp upstream
Tssr145007	transcription start site region 145007	1491 bp upstream
Tssr145008	transcription start site region 145008	1525 bp upstream
Tssr145009	transcription start site region 145009	1542 bp upstream
Tssr145010	transcription start site region 145010	1945 bp upstream
Tssr145011	transcription start site region 145011	1958 bp upstream
Tssr145012	transcription start site region 145012	1970 bp upstream
Tssr145013	transcription start site region 145013	1989 bp upstream
Tssr148459	transcription start site region 148459	1491 bp downstream
Tssr148460	transcription start site region 148460	1512 bp downstream
Tssr148461	transcription start site region 148461	1551 bp downstream
Tssr148462	transcription start site region 148462	1570 bp downstream
Tssr148463	transcription start site region 148463	1973 bp downstream