rs108139557 SNP Detail

Summary

• ID
  rs108139557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCCAG CTATGTGTGA
  GTGTTTTATC GGCATGTATG TCTATGTATT GTGGGTGTAG TGCCTAAGGA GGTCAGAGGA
  GAACATCAGA TCCTCTAGAA CAGTAGTTAC AGTCGGTTGT GGGTTGCCAT CTTGGCTGCT
  AGGAATTGAG TGCAGCTCCT CTGCGGGAGT TTTTAACTGC TGAGCCATCT CTCCAGCCCT
  R
  CCAGGTCCCT TTCAAGGCCA ATACAATTCA TATAGTTAAC AGAAATGTAC TTTAGATACA
  CTTTTGCATT AGGTTTCTGC CGTTTTCCGT GGCTCTTTTT CCAGTACCAC ATCCTGTCTC
  TTGTGTTTCC TTTTTCTATT CTTTAAATGT ATCTATACCC TAAGCTTATG AGTCCTCAGA
  TTTCTAGAGA TTTGCGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148003989	ENSMUSSNP6306642	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320565081	CHEV_2_153606418	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108139557					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1328 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	949 bp upstream
Rr567738	regulatory region 567738	960 bp distal
Rr567739	regulatory region 567739	859 bp distal
Tssr20916	transcription start site region 20916	1447 bp downstream
Tssr20917	transcription start site region 20917	1431 bp downstream
Tssr20918	transcription start site region 20918	1403 bp downstream